پایان‌نامه‌های کارشناسی ارشد و دکتری بیوتکنولوژی

2016

Sending Out an SOS: Mitochondria as a Signaling Hub, Iryna Bohovych, Oleh Khalimonchuk
Biochemistry — Faculty Publications

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Structural Determinants Allowing Transferase Activity in SENSITIVE TO FREEZING 2, Classified as a Family I Glycosyl Hydrolase, Rebecca Roston, Kun Wang, Leslie A. Kuhn, Christoph Benning
Biochemistry — Faculty Publications

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Small-angle X-ray Scattering Studies of the Oligomeric State and Quaternary Structure of the Trifunctional Proline Utilization A (PutA) Flavoprotein from Escherichia coli, Ranjan K. Singh, John D. Larson, Weidong Zhu, Robert P. Rambo, Greg L. Hura, Donald F. Becker, John J. Tanner
Biochemistry — Faculty Publications

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Determining Gene Specific Chromatin Differences in Sulfolobus solfataricus: Expression of MerR Protein for Targeted-ChIP Antibody Production, Erica M. North, Sophie Payne, Sam McCarthy, Tyler Johnson, Paul Helmuth Blum
UCARE Research Products

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Methods for Detecting Microbial Methane Production and Consumption by Gas Chromatography, Jared T. Aldridge, Jennie L. Catlett, Megan L. Smith, Nicole R. Buan
Biochemistry — Faculty Publications

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Stabilin-1 and Stabilin-2 are specific receptors for the cellular internalization of phosphorothioate-modified antisense oligonucleotides (ASOs) in the liver, Colton M. Miller, Aaron J. Donnerr, Emma E. Blank, Andrew W. Egger, Brianna M. Kellar, Michael E. Østergaard, Punit P. Seth, Edward N. Harris
Biochemistry — Faculty Publications

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Oma1 Links Mitochondrial Protein Quality Control and TOR Signaling To Modulate Physiological Plasticity and Cellular Stress Responses, Iryna Bohovych, Stavroula Kastora, Sara Christianson, Danelle Topil, Heejeong Kim, Teresa Fangman, You J. Zhou, Antoni Barrientos, Jaekwon Lee, Alistair J.P. Brown, Oleh Khalimonchuk
Biochemistry — Faculty Publications

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Regulation of DJ-1 by glutaredoxin 1 in vivo – implications for Parkinson’s disease, William M. Johnson, Marcin Golczak, Kyonghwan Choe, Pierce L. Curran, Olga Gorelenkova Miller, Chen Yao, Wenzhang Wang, Jiusheng Lin, Nicole M. Milkovic, Ajit Ray, Vijayalakshmi Ravindranath, Xiongwei Zhu, Mark A. Wilson, Amy L. Wilson-Delfosse, Shu G. Chen, John J. Mieyal
Biochemistry — Faculty Publications

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Systems Perturbation Analysis of a Large-Scale Signal Transduction Model Reveals Potentially Influential Candidates for Cancer Therapeutics, Bhanwar Lal Puniya, Laura Allen, Colleen Hochfelde, Mahbubul Majumder, Tomáš Helikar
Biochemistry — Faculty Publications

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Astrogliosis in a dish: Substrate stiffness induces astrogliosis in primary rat astrocytes, Christina L. Wilson, Stephen L. Hayward, Srivatsan Kidambi
Chemical and Biomolecular Engineering — All Faculty Papers

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Inhibiting hexamer disassembly of human UDP-glucose dehydrogenase by photoactivated amino acid crosslinking, George Grady, Ashley Thelen, Jaleen Albers, Tong Ju, Jiantao Guo, Joseph J. Barycki, Melanie A. Simpson
Biochemistry — Faculty Publications

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Chloroplast membrane remodeling during freezing stress is accompanied by cytoplasmic acidification activating SENSITIVE TO FREEZING 2, Allison C. Barnes, Christoph Benning, Rebecca Roston
Biochemistry — Faculty Publications

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Potassium and the K+/H+ Exchanger Kha1p Promote Binding of Copper to ApoFet3p Multi-copper Ferroxidase, Xiaobin Wu, Heejeong Kim, Javier Seravalli, Joseph J. Barycki, P. John Hart, David W. Gohara, Enrico Di Cera, Won Hee Jung, Daniel J. Kosman, Jaekwon Lee
Biochemistry — Faculty Publications

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Endoplasmic Reticulum-associated Degradation of Pca1p, a Polytopic Protein, via Interaction with the Proteasome at the Membrane, Nathan Smith, David J. Adle, Miaoyun Zhao, Xiaojuan Quin, Heejeong Kim, Jaekwon Lee
Biochemistry — Faculty Publications

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Analysis of Oligomerization Properties of Heme a Synthase Provides Insights into Its Function in Eukaryotes, Samantha Swenson, Andrew Cannon, Nicholas J. Harris, Nicholas G. Taylor, Jennifer L. Fox, Oleh Khalimonchuk
Biochemistry — Faculty Publications

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Fatty acid transport proteins: targeting FATP2 as a gatekeeper involved in the transport of exogenous fatty acids, Paul N. Black, Constance Ahowesso, David Montefusco, Nipun Saini, Concetta C. DiRusso
Biochemistry — Faculty Publications

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Alcoholic vs non-alcoholic fatty liver in rats: distinct differences in endocytosis and vesicle trafficking despite similar pathology, Karuna Rasineni, Daniel D. Penrice, Sathish Kumar Natarajan, Mark A. McNiven, Benita L. McVicker, Kusum K. Kharbanda, Carol A. Casey, Edward N. Harris
Biochemistry — Faculty Publications

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Activation of ERK and NF-κB during HARE-Mediated Heparin Uptake Require Only One of the Four Endocytic Motifs, Madhu S. Pandey, Colton M. Miller, Edward N. Harris, Paul H. Weigel
Biochemistry — Faculty Publications

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Pluralistic and stochastic gene regulation: examples, models and consistent theory, Elisa N. Salas, Jiang Shu, Matyas F. Cserhati, Donald P. Weeks, Istvan Ladunga
Biochemistry — Faculty Publications

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Endoplasmic Reticulum-associated Degradation of Pca1p, a Polytopic Protein, via Interaction with the Proteasome at the Membrane, Nathan Smith, David J. Adle, Miaoyun Zhao, Xiaojuan Qin, Heejeong Kim, Jaekwon Lee
Biochemistry — Faculty Publications

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Cadmium and Secondary Structure-dependent Function of a Degron in the Pca1p Cadmium Exporter, Nathan Smith, Wenzhong Wel, Miaoyun Zhao, Xiaojuan Quin, Javier Seravalli, Heejeong Kim, Jaekwon Lee
Biochemistry — Faculty Publications

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Caloric restriction of db/db mice reverts hepatic steatosis and body weight with divergent hepatic metabolism, Kyung Eun Kim, Youngae Jung, Soonki Min, Miso Nam, Rok Won Heo, Byeong Tak Jeon, Dae Hyun Song, Chin-ok Yi, Eun Ae Jeong, Hwajin Kim, Jeonghyun Kim, Seon-Yong Jeong, Woori Kwak, Do Hyun Ryu, Tamas L. Horvath, Gu Seob Roh, Geum-Sook Hwang
Biochemistry — Faculty Publications

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Atomic resolution experimental phase information reveals extensive disorder and bound 2-methyl-2,4-pentanediol in Ca2+-calmodulin, Jiusheng Lin, Henry van den Bedem, Axel T. Brunger, Mark A. Wilson
Biochemistry — Faculty Publications

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Synthesis and transfer of galactolipids in the chloroplast envelope membranes of Arabidopsis thaliana, Amélie Kelly, Barbara Kalisch, Georg Hölzl, Sandra Schulze, Juliane Thiele, Michael Melzer, Rebecca L. Roston, Christoph Benning, Peter Dörmann
Biochemistry — Faculty Publications

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Loss of exogenous androgen dependence by prostate tumor cells is associated with elevated glucuronidation potential, Brenna M. Zimmer, Michelle E. Howell, Qin Wei, Linlin Ma, Trevor Romsdahl, Eileen G. Loughman, Jonathan E. Markham, Javier Seravalli, Joseph J. Barycki, Melanie A. Simpson
Biochemistry — Faculty Publications

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2015

Background differences in baseline and stimulated MMP levels influence abdominal aortic aneurysm susceptibility, Matthew A. Dale, Melissa K. Suh, Shijia Zhao, Trevor Meisinger, Linxia Gu, Vicki J. Swier, Devendra K. Agrawal, Timothy Greiner, Jeffrey S. Carson, B. Timothy Baxter, Wanfen Xiong
Mechanical & Materials Engineering Faculty Publications

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Next-Generation mRNA Sequencing Reveals Pyroptosis-Induced CD4+ T Cell Death in Early Simian Immunodeficiency Virus-Infected Lymphoid Tissues, Wuxun Lu, Andrew J. Demers, Fangrui Ma, Guobin Kang, Zhe Yuan, Yanmin Wan, Yue Li, Jiangqing Xu, Mark Lewis, Qingsheng Li
Papers from the Nebraska Center for Biotechnology

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Genetic Engineering Online Lessons Improve Teaching and Increase Knowledge and Accepting Attitudes Among Students, Grace Troupe
Embargoed Master’s Theses

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Assessment of Variation in Susceptibility of the Fall Armyworm, Spodoptera frugiperda (J.E. Smith) (Lepidoptera: Noctuidae), to Bacillus thuringiensis Toxins, Karen Ferreira da Silva
Dissertations and Student Research in Entomology

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Proline Metabolism Increases katG Expression and Oxidative Stress Resistance in Escherichia coli, Lu Zhang, James R. Alfano, Donald F. Becker
Biochemistry — Faculty Publications

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Correction for Sandai et al., The Evolutionary Rewiring of Ubiquitination Targets Has Reprogrammed the Regulation of Carbon Assimilation in the Pathogenic Yeast Candida albicans, Doblin Sandai, Zhikang Yin, Laura Selway, David Stead, Janet Walker, Michelle D. Leach, Iryna Bohovych, Iuliana V. Ene, Stavroula Kastora, Susan Budge, Carol A. Munro, Frank C. Odds, Neil A.R. Gow, Alistair J.P. Brown
Biochemistry — Faculty Publications

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First Evidence for Substrate Channeling between Proline Catabolic Enzymes A VALIDATION OF DOMAIN FUSION ANALYSIS FOR PREDICTING PROTEIN-PROTEIN INTERACTIONS, Nikhilesh Sanyal, Benjamin W. Arentson, John J. Tanner, Donald F. Becker
Biochemistry — Faculty Publications

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Chloroplast lipid transfer processes in Chlamydomonas reinhardtii involving a TRIGALACTOSYLDIACYLGLYCEROL 2 (TGD2) ortholog, Jaruswan Warakanont, Chia-Hong Tsai, Elena J.S. Michel, George R. Murphy III, Peter Y. Hsueh, Rebecca L. Roston, Barbara B. Sears, Christoph Benning
Biochemistry — Faculty Publications

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Triacylglycerol synthesis during nitrogen stress involves the prokaryotic lipid synthesis pathway and acyl chain remodeling in the microalgae Coccomyxa subellipsoidea, James W. Allen, Concetta C. DiRusso, Paul N. Black
Biochemistry — Faculty Publications

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Overexpression of alpha-synuclein at non-toxic levels increases dopaminergic cell death induced by copper exposure via modulation of protein degradation pathways, Annadurai Anandhan, Humberto Rodriguez-Rocha, Iryna Bohovych, Amy M. Griggs, Laura Zavala-Flores, Elsa M. Reyes-Reyes, Javier Seravalli, Lia A. Stanciu, Jaekwon Lee, Jean-Christophe Rochet, Oleh Khalimonchuk, Rodrigo Franco
Biochemistry — Faculty Publications

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Mitochondrial Protein Quality Control: The Mechanisms Guarding Mitochondrial Health, Iryna Bohovych, Sherine S.L. Chan, Oleh Khalimonchuk
Biochemistry — Faculty Publications

Phenotypic screening identifies Brefeldin A/Ascotoxin as an inducer of lipid storage in the algae Chlamydomonas reinhardtii, Nishikant Wase, Boqiang Tu, Paul N. Black, Concetta C. DiRusso
Biochemistry — Faculty Publications

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Cytosolic Fe-S Cluster Protein Maturation and Iron Regulation Are Independent of the Mitochondrial Erv1/Mia40 Import System, Hatice K. Ozer, Adrienne C. Dlouhy, Jeremy D. Thornton, Jingjing Hu, Yilin Liu, Joseph J. Barycki, Janneke Balk, Caryn E. Outten
Biochemistry — Faculty Publications

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Metalloprotease OMA1 Fine-tunes Mitochondrial Bioenergetic Function and Respiratory Supercomplex Stability, Iryna Bohovych, Mario R. Fernandez, Jennifer J. Rahn, Krista D. Stackley, Jennifer E. Bestman, Annadurai Anandhan, Rodrigo Franco, Steven M. Claypool, Robert E. Lewis, Sherine S.L. Chan, Oleh Khalimonchuk
Biochemistry — Faculty Publications

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Rerouting Cellular Electron Flux To Increase the Rate of Biological Methane Production, Jennie L. Catlett, Alicia M. Ortiz, Nicole R. Baun
Biochemistry — Faculty Publications

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Drosophila Muller F Elements Maintain a Distinct Set of Genomic Properties Over 40 Million Years of Evolution, Wilson Leung, Cheryl Bailey, Participating Students and Faculty of the Genomics Education Partnership
Biochemistry — Faculty Publications

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Hyaluronidase Hyal1 Increases Tumor Cell Proliferation and Motility through Accelerated Vesicle Trafficking, Caitlin O McAtee, Abigail R. Berkebile, Christian Elowsky, Teresa Fangman, Joseph J. Barycki, James K. Wahl III, Oleh Khalimonchuk, Naava Naslavsky, Steve Caplan, Melanie A. Simpson
Biochemistry — Faculty Publications

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2014

Long-acting antituberculous therapeutic nanoparticles target macrophage endosomes, Benson J. Edagwa, Dongwei Guo, Pavan Puligujja, Han Chen, JoEllyn McMillan, Xinming Liu, Howard Gendelman, Prabagaran Narayanasamy
Papers from the Nebraska Center for Biotechnology

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Virus-Host Mucosal Interactions During Early SIV Rectal Transmission, Wuxun Lu, Fangrui Ma, Alexander Churbanov, Yanmin Wan, Yue Li, Guobin Kang, Zhe Yuan, Dong Wang, Chi Zhang, Jianqing Xu, Mark Lewis, Qingsheng Li
Papers from the Nebraska Center for Biotechnology

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A Course-Based Research Experience: How Benefits Change with Increased Investment in Instructional Time, Christopher D. Shaffer, Cheryl Bailey, Students and TAs in Genomics Education Partnership courses
Biochemistry — Faculty Publications

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The Role of Sirtuin 1 and Ceramide in t10c12 Conjugated Linoleic Acid Induced Delipidation in 3T3-L1 Adipocytes, Wei Wang
Theses and Dissertations in Animal Science

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New Clox Systems for Rapid and Efficient Gene Disruption in Candida albicans, Shahida Shahana, Delma S. Childers, Elizabeth R. Ballou, Iryna Bohovych, Frank C. Odds, Neil A.R. Gow, Alistair J.P. Brown
Biochemistry — Faculty Publications

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Integrating mitosis, toxicity, and transgene expression in a telecommunications packet-switched network model of lipoplex-mediated gene delivery, Timothy M. Martin, Beata Wysocki, Jared P. Beyersdorf, Tadeusz A. Wysocki, Angela K. Pannier
Biological Systems Engineering: Papers and Publications

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Mechanisms Underlying the Exquisite Sensitivity of Candida albicans to Combinatorial Cationic and Oxidative Stress That Enhances the Potent Fungicidal Activity of Phagocytes, Despoina Kaloriti, Mette Jacobsen, Zhikang Yin, Miranda Patterson, Anna Tillmann, Deborah A. Smith, Emily Cook, Tao You, Melissa J. Grimm, Iryna Bohovych, Celso Grebogi, Brahm H. Segal, Neil A.R. Gow, Ken Haynes, Janet Quinn, Alistair J.P. Brown
Biochemistry — Faculty Publications

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Evidence for Hysteretic Substrate Channeling in the Proline Dehydrogenaseand ∆1-Pyrroline-5-carboxylate Dehydrogenase Coupled Reaction of Proline UtilizationA(PutA), Michael A Moxley, Nikhilesh Sanyal, Navasona Krishnan, John J. Tanner, Donald F. Becker
Biochemistry — Faculty Publications

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Proline Biosynthesis Is Required for Endoplasmic Reticulum Stress Tolerance in Saccharomyces cerevisiae, Xinwen Liang, M. B. Dickman, Donald F. Becker
Biochemistry — Faculty Publications

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Estimating the Frequency of Cry1F Resistance in Field Populations of the European Corn Borer (Lepidoptera: Crambidae), Blair D. Siegfried, Murugesan Rangasamy, Haichuan Wang, Terence A. Spencer, Chirakkal V. Haridas, Brigitte Tenhumberg, Douglas V. Sumerford, Nicholas P. Storer
Faculty Publications in the Biological Sciences

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Emerging roles for hyaluronidase in cancer metastasis and therapy, Caitlin O. McAtee, Joseph J. Barycki, Melanie A. Simpson
Biochemistry — Faculty Publications

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Emerging regulatory paradigms in glutathione metabolism, Yilin Liu, Annastasia S. Hyde, Melanie A. Simpson, Joseph J. Barycki
Biochemistry — Faculty Publications

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Preliminary joint X-ray and neutron protein crystallographic studies of ecDHFR complexed with folate and NADP+, Qun Wan, Audrey Y. Kovalevsky, Mark A. Wilson, Brad C. Bennett, Paul Langan, Chris Dealwis
Biochemistry — Faculty Publications

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Protein/Protein Interactions in the Mammalian Heme Degradation Pathway HEME OXYGENASE-2, CYTOCHROME P450 REDUCTASE, AND BILIVERDIN REDUCTASE, Andrea L. M. Spencer, Ireena Bagai, Donald F. Becker, Erik R. P. Zuiderweg, Stephen W. Ragsdale
Biochemistry — Faculty Publications

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Stress-triggered Activation of the Metalloprotease Oma1 Involves Its C-terminal Region and Is Important for Mitochondrial Stress Protection in Yeast, Iryna Bohovych, Garrett Donaldson, Sara Christianson, Nataliya Zahayko, Oleh Khalimonchuk
Biochemistry — Faculty Publications

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Stress adaptation in a pathogenic fungus, Alistair J. P. Brown, Susan Budge, Despoina Kaloriti, Anna Tillmann, Mette D. Jacobsen, Zhikang Yin, Iuliana V. Ene, Iryna Bohovych, Doblin Sandai, Stavroula Kastora, Joanna Potrykus, Elizabeth R. Ballou, Delma S. Childers, Shahida Shahana, Michelle D. Leach
Biochemistry — Faculty Publications

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Plant Acyl-CoA:Lysophosphatidylcholine Acyltransferases (LPCATs) Have Different Specificities in Their Forward and Reverse Reactions, Ida Lager, Jenny Lindberg Yilmaz, Xue-Rong Zhou, Katarzyna Jasieniecka, Michael Kazachkov, Peng Wang, Jitao Zou, Randall Weselake, Mark A. Smith, Shen Bayon, John M. Dyer, Jay Shockey, Ernst Heinz, Allan Green, Antoni Banas, Sten Stymne
Biochemistry — Faculty Publications

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2013

Near-Infrared Surface-Enhanced Fluorescence Using Silver Nanoparticles in Solution, Michael D. Furtaw
Mechanical (and Materials) Engineering — Dissertations, Theses, and Student Research

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Biomass Gasification: An Alternative Solution to Animal Waste Management, Hanjing Wu
Biological Systems Engineering–Dissertations, Theses, and Student Research

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Probing Arabidopsis Chloroplast Diacylglycerol Pools by Selectively Targeting Bacterial Diacylglycerol Kinase to Suborganellar Membranes, Bagyalakshmi Muthan, Rebecca Roston, John E. Froehlich, Christoph Benning
Biochemistry — Faculty Publications

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Rapid Detection and Quantification of Triacylglycerol by HPLC–ELSD in Chlamydomonas reinhardtii and ChlorellaStrains, Naoko Kobayashi, Eric A. Noel, Austin Barnes, Julian Rosenberg, Concetta C. DiRusso, Paul Black, George A. Oyler
Biochemistry — Faculty Publications

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Functional convergence of structurally distinct thioesterases from cyanobacteria and plants involved in phylloquinone biosynthesis, Fabienne Furt, William J. Allen, Joshua R. Widhalm, Peter Madzelan, Robert C. Rizzo, Gilles J. Basset, Mark A. Wilson
Biochemistry — Faculty Publications

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The Hyaluronan Receptor for Endocytosis (HARE) Activates NF-κB-mediated Gene Expression in Response to 40–400-kDa, but Not Smaller or Larger, Hyaluronans, Madhu S. Pandey, Bruce A. Baggenstoss, Jennifer Washburn, Edward N. Harris, Paul H. Weigel
Biochemistry — Faculty Publications

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Reporters for the analysis of N-glycosylation in Candida albicans, Shahida Shahana, Hector M. Mora-Montes, Luis Castillo, Iryna Bohovych, Chirag C. Sheth, Frank C. Odds, Neil A.R. Gow, Alistair J.P. Brown
Biochemistry — Faculty Publications

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Bile-acid-mediated decrease in endoplasmic reticulum stress: a potential contributor to the metabolic benefits of ileal interposition surgery in UCD-T2DM rats, Bethany P. Cummings, Ahmed Bettaieb, James L. Graham, Jaehyoung Kim, Fangrui Ma, Noreene Shibata, Kimber L. Stanhope, Cecilia Giulivi, Frederik Hansen, Jacob Jelsing, Niels Vrang, Mark Kowala, Michael L. Chouinard, Fawaz G. Haj, Peter J. Havel
Papers from the Nebraska Center for Biotechnology

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2012

Cross Regulation of Sirtuin 1, AMPK, and PPARy in Conjugated Linoleic Acid Treated Adipocytes, Shan Jiang, Wei Wang, Jess Miner, Michael E. Fromm
Biochemistry — Faculty Publications

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Cellular Responses of Candida albicans to Phagocytosis and the Extracellular Activities of Neutrophils Are Critical to Counteract Carbohydrate Starvation, Oxidative and Nitrosative Stress, Pedro Miramón, Christine Dunker, Hanna Windecker, Iryna Bohovych, Alistair J.P. Brown, Oliver Kurzai, Bernhard Hube
Biochemistry — Faculty Publications

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The Evolutionary Rewiring of Ubiquitination Targets Has Reprogrammed the Regulation of Carbon Assimilation in the Pathogenic Yeast Candida albicans, Doblin Sandai, Zhikang Yin, Laura Selway, David Stead, Janet Walker, Michelle D. Leach, Iryna Bohovych, Iuliana V. Ene, Stavroula Kastora, Susan Budge, Carol A. Munro, Frank C. Odds, Neil A.R. Gow, Alistair J.P. Brown
Biochemistry — Faculty Publications

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Small but Crucial: The Novel Small Heat Shock Protein Hsp21 Mediates Stress Adaptation and Virulence inCandida albicans, Francois L. Mayer, Duncan Wilson, Ilse D. Jacobsen, Pedro Miramón, Silvia Slesiona, Iryna Bohovych, Alistair J.P. Brown, Bernhard Hube
Biochemistry — Faculty Publications

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Genome, Functional Gene Annotation, and Nuclear Transformation of the Heterokont Oleaginous AlgaNannochloropsis oceanica CCMP1779, Astrid Vieler, Guangxi Wu, Chia-Hong Tsai, Blair Bullard, Adam J. Cornish, Christopher Harvey, Ida-Barbara Reca, Chelsea Thornburg, Rujira Achawanantakun, Christopher J. Buehl, Michael S. Campbell, David Cavalier, Kevin L. Childs, Teresa J. Clark, Rahul Deshpande, Erika Erickson, Ann Armenia Ferguson, Witawas Handee, Que Kong, Xiaobo Li, Bensheng Liu, Steven Lundback, Cheng Peng, Rebecca Roston, Michigan State University, Jeffrey P. Simpson, Allan TerBush, Jaruswan Warakanont, Simone Zäuner, Eva M. Farre, Eric L. Hegg, Ning Jiang, Min-Hao Kuo, Yan Lu, Krishna K. Niyogi, John Ohlrogge, Katherine W. Osteryoung, Yair Shachar-Hill, Barbara B. Sears, Yanni Sun, Hideki Takahashi, Mark Yandell, Shin-Han Shiu, Christoph Benning
Biochemistry — Faculty Publications

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Selective Oma1 Protease-mediated Proteolysis of Cox1 Subunit of Cytochrome Oxidase in Assembly Mutants, Oleh Khalimonchuk, Mi-Young Jeong, Talina Watts, Elliott Ferris, Dennis R. Winge
Biochemistry — Faculty Publications

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Oligomerization of Heme o Synthase in Cytochrome Oxidase Biogenesis Is Mediated by Cytochrome Oxidase Assembly Factor Coa2, Oleh Khalimonchuk, Hyung Kim, Talina Watts, Xochitl Perez-Martinez, Dennis R. Winge
Biochemistry — Faculty Publications

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TGD1, -2, and -3 Proteins Involved in Lipid Trafficking Form ATP-binding Cassette (ABC) Transporter with Multiple Substrate-binding Proteins, Rebecca Roston, Jinpeng Gao, Monika W. Murcha, James Whelan, Christoph Benning
Biochemistry — Faculty Publications

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UDP-glucose Dehydrogenase Polymorphisms from Patients with Congenital Heart Valve Defects Disrupt Enzyme Stability and Quaternary Assembly, Annastasia S. Hyde, Erin L. Farmer, Katherine E. Easley, Kristy van Lammeren, Vincent M. Christoffels, Joseph J. Barycki, Jeroen Bakkers, Melanie A. Simpson
Biochemistry — Faculty Publications

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2011

APPLIED AND MECHANISTIC STUDIES OF MICROBIAL 17BETA-ESTRADIOL DEGRADATION, Zhongtian Li
Civil Engineering Theses, Dissertations, and Student Research

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Escherichia coli Thioredoxin-like Protein YbbN Contains an Atypical Tetratricopeptide Repeat Motif and Is a Negative Regulator of GroEL, Jiusheng Lin, Mark A. Wilson
Biochemistry — Faculty Publications

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FUS Transgenic Rats Develop the Phenotypes of Amyotrophic Lateral Sclerosis and Frontotemporal Lobar Degeneration, Cao Huang, Hongxia Zhou, Jianbin Tong, Han Chen, Yong-Jian Liu, Dian Wang, Xiaotao Wei, Xugang Xia
Papers from the Nebraska Center for Biotechnology

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Enzymatic defects underlying hereditary glutamate cysteine ligase deficiency are mitigated by association of the catalytic and regulatory subunits, Melanie Neely Willis, Yilin Liu, Ekaterina I. Biterova, Melanie A. Simpson, Heejeong Kim, Jaekwon Lee, Joseph J. Barycki
Biochemistry — Faculty Publications

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Reduced Utilization of Selenium by Naked Mole Rats Due to a Specific Defect in GPx1 Expression, Marina V. Kasaikina, Alexei V. Lobanov, Mikalai I. Malinouski, Byung Cheon Lee, Javier Seravalli, Dmitri E. Fomenko, Anton A. Turanov, Lydia Finney, Stefan Vogt, Thomas J. Park, Richard A. Miller, Dolph L. Hatfield, Vadim N. Gladyshev
Biochemistry — Faculty Publications

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Mne1 Is a Novel Component of the Mitochondrial Splicing Apparatus Responsible for Processing of a COX1 Group I Intron in Yeast, Talina Watts, Oleh Khalimonchuk, Rachel Z. Wolf, Edward M. Turk, Georg Mohr, Dennis R. Winge
Biochemistry — Faculty Publications

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Functional Diversification of Thylakoidal Processing Peptidases in Arabidopsis thaliana, Shih-Chi Hsu, Joshua K. Endow, Nicholas J. Ruppel, Rebecca Roston, Amy J. Baldwin, Kentaro Inoue
Biochemistry — Faculty Publications

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A 4-Selenocysteine, 2-Selenocysteine Insertion Sequence (SECIS) Element Methionine Sulfoxide Reductase fromMetridium senile Reveals a Non-catalytic Function of Selenocysteines, Byung Cheon Lee, Alexey V. Lobanov, Stefano M. Marino, Alaattin Kaya, Javier Seravalli, Dolph L. Hatfield, Vadim N. Gladyshev
Biochemistry — Faculty Publications

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Defining a relationship between dietary fatty acids and the cytochrome P450 system in a mouse model of fatty liver disease, Monika Gonzalez, Whitney Sealls, Elliot D. Jesch, M. Julia Brosnan, Istvan Ladunga, Xinxin Ding, Paul N. Black, Concetta C. DiRusso
Biochemistry — Faculty Publications

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2010

Development of an Electrochemical Insulin Sensor Based on a High Affinity DNA Sequence Found in the Insulin-linked Polymorphic Region, Jennifer Y. Gerasimov
Embargoed Master’s Theses

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Transgenic Rat Model of Neurodegeneration Caused by Mutation in the TDP Gene, Hongxia Zhou, Cao Huang, Han Chen, Dian Wang, Carlisle P. Landel, Pedro Yuxing Xia, Robert Bowser, Yong-Jian Liu, Xu Gang Xia
Papers from the Nebraska Center for Biotechnology

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Identification and characterization of small compound inhibitors of human FATP2, Angel Sandoval, Aalap Chokshi, Elliot D. Jesch, Paul N. Black, Concetta C. DiRusso
Biochemistry — Faculty Publications

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Structure of the Proline Utilization A Proline Dehydrogenase Domain Inactivated by N-propargylglycine Provides Insight into Conformational Changes Induced by Substrate Binding and Flavin Reduction, Dhiraj Srivastava, Weidong Zhu, William H. Johnson Jr., Christian P. Whitman, Donald F. Becker, John J. Tanner
Biochemistry — Faculty Publications

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CUG Start Codon Generates Thioredoxin/Glutathione Reductase Isoforms in Mouse Testes, Maxim Gerashchenko, Dan Su, Vadim Gladyshev
Biochemistry — Faculty Publications

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Functional Hybrid Rubisco Enzymes with Plant Small Subunits and Algal Large Subunits ENGINEERED rbcS cDNA FOR EXPRESSION IN CHLAMYDOMONAS, Todor Genkov, Moritz Meyer, Howard Griffiths, Robert J. Spreitzer
Biochemistry — Faculty Publications

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Structural Basis for Feedback and Pharmacological Inhibition of Saccharomyces cerevisiae Glutamate Cysteine Ligase, Ekaterina I Biterova, Joseph J. Barycki
Biochemistry — Faculty Publications

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Regulation of Sealing Ring Formation by L-plastin and Cortactin in Osteoclasts, Tao Ma, Kavitha Sadashivalah, Nandakumar Madayiputhiya, Meenakshi A. Chellaia
Biochemistry — Faculty Publications

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Mzm1 Influences a Labile Pool of Mitochondrial Zinc Important for Respiratory Function, Aaron Atkinson, Oleh Khalimonchuk, Pamela Smith, Hana Sabic, David Eide, Dennis R. Winge
Biochemistry — Faculty Publications

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Identification and Characterization of Oxalate Oxidoreductase, a Novel Thiamine Pyrophosphate-dependent 2-Oxoacid Oxidoreductase That Enables Anaerobic Growth on Oxalate, Elizabeth Pierce, Donald F. Becker, Stephen W. Ragsdale
Biochemistry — Faculty Publications

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2009

Glucose Promotes Stress Resistance in the Fungal Pathogen Candida albicans, Alexandra Rodaki, Iryna M. Bohovych, Brice Enjalbert, Tim Young, Frank C. Odds, Neil A.R. Gow, Alistair J.P. Brown
Biochemistry — Faculty Publications

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Mechanistic Details of Glutathione Biosynthesis Revealed by Crystal Structures of Saccharomyces cerevisiaeGlutamate Cysteine Ligase, Ekaterina I. Biterova, Joseph J. Barycki
Biochemistry — Faculty Publications

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Crystal structure of acivicin-inhibited γ-glutamyltranspeptidase reveals critical roles for its C-terminus in autoprocessing and catalysis, Kristin Williams, Sierra Cullati, Aaron Sand, Ekaterina I. Biterova, Joseph J. Barycki
Biochemistry — Faculty Publications

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A Role for the ATP7A Copper-transporting ATPase in Macrophage Bactericidal Activity, Carine White, Jaekwon Lee, Taiho Kambe, Kevin Fritsche, Michael J. Petris
Biochemistry — Faculty Publications

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Copper Transport Activity of Yeast Ctr1 Is Down-regulated via Its C Terminus in Response to Excess Copper, Xiaobin Wu, Devis Sinani, Heejeong Kim, Jaekwon Lee
Biochemistry — Faculty Publications

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Targeting the fatty acid transport proteins (FATP) to understand the mechanisms linking fatty acid transport to metabolism, Paul N. Black, Angel Sandoval, Elsa Arias-Barrau, Concetta C. DiRusso
Biochemistry — Faculty Publications

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Hyaluronidase Activity of Human Hyal1 Requires Active Site Acidic and Tyrosine Residues, Ling Zhang, Alamelu G. Bharadwaj, Andrew Casper, Joel Barkley, Joseph J. Barycki, Melanie A. Simpson
Biochemistry — Faculty Publications

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Using the World Wide Web to Educate and Inform the Public about Risk and Agricultural Biotechnology, Douglas A. Golick, Robert D. Peterson, Leon G. Higley
Faculty Publications: Department of Entomology

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2008

Identification of Guanylate Cyclases and Related Signaling Proteins in Sperm Tail from Sea Stars by Mass Spectrometry, Mia Nakachi, Midori Matsumoto, Philip M. Terry, Ronald L. Cerny, Hideaki Moriyama
Hideaki Moriyama Publications

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Functional Domains of the Fatty Acid Transport Proteins: Studies Using Protein Chimeras, Concetta C. DiRusso, Dina Darwis, Thomas Obermeyer, Paul N. Black
Biochemistry — Faculty Publications

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Mapping the Functional Interaction of Sco1 and Cox2 in Cytochrome Oxidase Biogenesis, Kevin Rigby, Paul A. Cobine, Oleh Khalimonchuk, Dennis R. Winge
Biochemistry — Faculty Publications

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The Highly Similar Arabidopsis Homologs of Trithorax ATX1 and ATX2 Encode Proteins with Divergent Biochemical Functions, Abdelaty Saleh, Raul Alvarez-Venegas, Mehtap Yilmaz, Oahn-Le, Guichuan Hou, Monther Sadder, Ayed Al-Abdallat, Yuannan Xia, Guoqinq Lu, Istvan Ladunga, Zoya Avramova
Papers from the Nebraska Center for Biotechnology

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2007

Evidence for a Pro-oxidant Intermediate in the Assembly of Cytochrome Oxidase, Oleh Khalimonchuk, Amanda Bird, Dennis R. Winge
Biochemistry — Faculty Publications

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Mechanistic Studies of the Long Chain Acyl-CoA Synthetase Faa1p from Saccharomyces cerevisiae, Hong Li, Elaina M. Melton, Steven Quackenbush, Concetta C. DiRusso, Paul N. Black
Biochemistry — Faculty Publications

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2006

Purification and Initial Biochemical Characterization of ATP:Cob(I)alamin Adenosyltransferase (EutT) Enzyme of Salmonella enterica, Nicole R. Baun, Jorge C. Escalante-Semerena
Biochemistry — Faculty Publications

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2005

Computer-assisted Docking of Flavodoxin with the ATP:Co(I)rrinoid Adenosyltransferase (CobA) Enzyme Reveals Residues Critical for Protein-Protein Interactions but Not for Catalysis, Nicole R. Baun, Jorge C. Escalante-Semerena
Biochemistry — Faculty Publications

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2004

5-Hydroxydecanoate is metabolised in mitochondria and creates a rate-limiting bottleneck for β-oxidation of fatty acids, Peter J. Hanley, Stefan Dröse, Ulrich Brandt, Rachel A. Lareau, Abir L. Banerjee, D. K. Srivastava, Leonard J. Banaszak, Joseph J. Barycki, Paul P. Van Veldhoven, Jürgen Daut
Biochemistry — Faculty Publications

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Interactions between Small Heat Shock Protein Subunits and Substrate in Small Heat Shock Protein-Substrate Complexes, Kenneth L. Friedrich, Kim C. Giese, Nicole R. Baun, Elizabeth Vierling
Biochemistry — Faculty Publications

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The Identity of Proteins Associated with a Small Heat Shock Protein during Heat Stress in Vivo Indicates That These Chaperones Protect a Wide Range of Cellular Functions, Eman Basha, Garrett J. Lee, Linda A. Breci, Andrew C. Hausrath, Nicole R. Baun, Kim C. Giese, Elizabeth Vierling
Biochemistry — Faculty Publications

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Mobilization of Intracellular Copper Stores by the Ctr2 Vacuolar Copper Transporter, Erin M. Rees, Jaekwon Lee, Dennis J. Thiele
Biochemistry — Faculty Publications

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2003

Transmembrane Movement of Exogenous Long-Chain Fatty Acids: Proteins, Enzymes, and Vectorial Esterification, Paul N. Black, Concetta C. DiRusso
Biochemistry — Faculty Publications

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2002

The ATP:Co(I)rrinoid Adenosyltransferase (CobA) Enzyme of Salmonella enterica Requires the 2’-OH Group of ATP for Function and Yields Inorganic Triphosphate as Its Reaction Byproduct, Maris V. Fonseca, Nicole R. Baun, Alexander R. Horswill, Ivan Rayment, Jorge C. Escalante-Semerena
Biochemistry — Faculty Publications

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2001

Construction of a Derivative of Agrobacterium tumefaciens C58 That Does Not Mutate to Tetracycline Resistance, Zhao-Qing Luo, Thomas E. Clemente, Stephen K. Farrand
Papers from the Nebraska Center for Biotechnology

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2000

Two-step Processing of Human Frataxin by Mitochondrial Processing Peptidase, Patrizia Cavadini, Jiri Adamec, Franco Taroni, Oleksandr Gakh, Grazia Isaya
Biochemistry — Faculty Publications

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Multiple Factors Independently Regulate hilA and Invasion Gene Expression in Salmonella enterica Serovar Typhimurium, Robin L. Lucas, C. Phoebe Lostroh, Concetta C. DiRusso, Michael P. Spector, Barry L. Wanner, Catherine A. Lee
Biochemistry — Faculty Publications

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Multiple Factors Independently Regulate hilA and Invasion Gene Expression in Salmonella enterica Serovar Typhimurium, Robin L. Lucas, C. Phoebe Lostroh, Concetta C. DiRusso, Michael P. Spector, Barry L. Wanner, Catherine A. Lee
Biochemistry — Faculty Publications

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1999

Yeast and Human Frataxin Are Processed to Mature Form in Two Sequential Steps by the Mitochondrial Processing Peptidase, Steven S. Branda, Patrizia Cavadini, Jiri Adamec, Frantisek Kalousek, Franco Taroni, Grazia Isaya
Biochemistry — Faculty Publications

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1998

Biodiesel Fuel from Animal Fat. Ancillary Studies on Transesterification of Beef Tallow, Fangrui Ma, L. Davis Clements, Milford Hanna
Papers from the Nebraska Center for Biotechnology

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1996

Role of the Escherichia coli FadR Regulator in Stasis Survival and Growth Phase-Dependent Expression of the uspA, fad, and fab Genes, Anne Farewell, Alfredo A. Diez, Concetta C. DiRusso, Thomas Nyström
Biochemistry — Faculty Publications

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1992

Occurrence of Temperature-Sensitive Phenotypic Plasticity in Chlorophyll-Deficient Mutants of Arabidopsis thaliana, John Markwell, John Osterman
Biochemistry — Faculty Publications

1990

Primary Sequence of the Escherichia coli fadBA Operon, Encoding the Fatty Acid-Oxidizing Multienzyme Complex, Indicates a High Degree of Homology to Eucaryotic Enzymes, Concetta C. DiRusso
Biochemistry — Faculty Publications

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1988

Can We Guarantee the Safety of Genetically Engineered Organisms in the Environment?, Kathleen H. Keeler, Frances E. Sharples
Faculty Publications in the Biological Sciences

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Nucleotide sequence of the fadR gene, a multifunctional regulator of fatty acid metabolism in Escherichia coli, Concetta C. DiRusso
Biochemistry — Faculty Publications

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1985

Cloning and Characterization of a Gene (fadR) Involved in Regulation of Fatty Acid Metabolism in Escherichia coli, Concetta C. DiRusso, William D. Nunn
Biochemistry — Faculty Publications

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1973

Palmityl Coenzyme A Inhibition of Fatty Acid Synthesis, Herman Knoche, Theodore W. Esders, Kirston Koths, Konrad Bloch
Biochemistry — Faculty Publications

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Characterization of a Fatty Acid Synthetase from Corynebacterium diphtheriae, Herman W. Knoche, Kirston E. Koths
Biochemistry — Faculty Publications

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1972

The Structure of an Ornithine-containing Lipid from Thiobacillus thiooxidans, Herman W. Knoche, Jessup M. Shively
Biochemistry — Faculty Publications

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1969

The Identification of cis-II, I2-Methylene-2-hydroxyoctadecanoic Acid from Thiobacillus thiooxidans, H. W. Knoche, J. M. Shively
Biochemistry — Faculty Publications

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1953

Concerning the Site of Nitrogen Absorption in Rats Fed Autoclaved or Raw Soybean Oil Mea, Raymond Borchers
Biochemistry — Faculty Publications

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1947

Riboflavin Production by Molds, George L. Peltier, Raymond Borchers
Biochemistry — Faculty Publications

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1942

The Effect Of Conditions Of Hydrolysis And Of Prolonged Heating Upon The Optical Rotation Of Sulfuric Acid Hydrolysates Of Zein, Raymond Borchers, Clarence P. Berg
Biochemistry — Faculty Publications

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Tryptophane Metabolism X. The Effect Of Feeding 1(-)-, Dl-, And D(+)-Tryptophane, D(-)And Dl-(β-3-Indolelactic Acid,(β-3-Indolepyruvic Acid, And L(-)Kynurenine Upon The Storage Of Liver Glycogen And The Urinary Output Of Kynurenic Acid, Kynurenine, And Total Acetone Bodies, Raymond Borchers, Clarence P. Berg, Newton E. Whitman
Biochemistry — Faculty Publications

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Threonine Deficiency in Hydrolysates of Zein Prepared by Autoclaving, Raymond Borchers, John R. Totter, Clarence P. Berg
Biochemistry — Faculty Publications

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